The read sequences in input SAM file do not appear to be ordered according to the start position of their alignments wit

[mamorani]

The read sequences in input SAM file do not appear to be ordered according to the start position of their alignments with the reference sequence. Because of this, there will be a decrease in performance when accessing the reads. For maximum performance, order the read sequences in the SAM file, before creating a BioMap object.


BioMap